1. John, A., R. Sun†, L. Maillart, A. J. Schaefer, E. Hamilton Spence and M. T. Perrin, “Macronutrient Variability in Human Milk from Donors to a Milk Bank: Implications for Feeding Preterm Infants,” 2019. To appear in PLoS ONE.
2. Tavaslioglu, O.†, O. A. Prokopyev and A. J. Schaefer, “Solving Stochastic and Bilevel Mixed-Integer Programs via a Generalized Value Function,” 2018. To appear in Operations Research.
3. Ng, S., et al. “Utility of Surveillance Imaging in Patients with Head and Neck Cancer Treated with Definitive Radiotherapy,” 2018. To appear in Cancer
4. Dehghanian, A.†, M. Kurt† and A. J. Schaefer, “Optimizing over Pure Stationary Equilibria in Consensus Stopping Games,” 2018. To appear in Mathematical Programming Computation.
5. Nemati, S.†, Z. Icten, L. Maillart and A. J. Schaefer, “Mitigating Information Asymmetry in Liver Allocation,” 2018. To appear in INFORMS Journal on Computing.
6. Batun, S.†, A. Bhandari, A. J. Schaefer, and M. S. Roberts, “Optimal Liver Acceptance for Risk-Sensitive Patients,” 2018. Service Science volume 10, number 3, pages 320- 333.
7. Tavaslioglu, O.†, T. Lee, S. Valeva and A. J. Schaefer, “On the Structure of the Inverse-Feasible Region of a Linear Program,” 2018. Operations Research Letters volume 46, number 1, pages 147-152.
8. Özaltĭn, O.†, O. A. Prokopyev, and A. J. Schaefer, “Optimal Design of the Seasonal Influenza Vaccine with Manufacturing Autonomy,” 2018. INFORMS Journal on Computing volume 30, number 2, pp. 371-387.
9. A. M. Stuebe, B. J. Jegier, E. B. Schwarz, B. D. Green, A. G. Reinhold, T. T. Colaizy, D. L. Bogen, A. J. Schaefer, J. Jeier, N. S. Green, M. C. Bartick, “An Online Calculator to Estimate the Impact of Changes in Breastfeeding Rates on Population Health for Women and Children,” 2017. Breastfeeding Medicine volume 12, number 10, pages 645-658.
10. M. C. Bartick, E. B. Schwarz, B. D. Green, A. G. Reinhold, B. J. Jegier, T. T. Colaizy, D. L. Bogen, A. J. Schaefer, and A. M. Stuebe, “Suboptimal Breastfeeding in the United States: Maternal and Pediatric Health Outcomes and Costs,” 2017. Maternal & Child Nutrition 13:e12366.
11. Nemati, S.†, O. A. Shylo, O. A. Prokopyev and A. J. Schaefer, “The Surgical Patient Routing Problem: A Central Planner Approach,” 2016. INFORMS Journal on Computing volume 28, number 4, pages 657-673.
12. Colaizy, T. T., M. C. Bartick, B. J. Jegier, B. D. Green, A. G. Reinhold, A. J. Schaefer, D. L. Bogen, E. B. Schwarz, A. M. Stuebe, “Impact of Preterm Formula on the Healthcare and Mortality Costs of Necrotizing Enterocolitis in Very Low Birthweight Infants,” 2016. Journal of Pediatrics volume 175, pages100-105.
13. Eckman1, D. E., L. M. Maillart and A. J. Schaefer, “Optimal Pinging Frequencies in the Search for an Immobile Beacon,” 2016. IIE Transactions volume 48, number 6, pages 489-500.
14. Khademi, A.†, D. Saure, A. J. Schaefer, M. S. Roberts and R. S. Braithwaite, “HIV Treatment in Resource-Limited Environments: Treatment Coverage and Insights,” 2016. Value in Health volume 18, issue 8, pp. 1113-1119.
15. Dehghanian, A.† and A. J. Schaefer, “Superadditive Characterizations of Pure Integer Programming Feasibility,” 2015. Optimization Letters volume 10, number 1, pp. 181- 188.
16. Lamperski, J1. and A. J. Schaefer, “A Polyhedral Characterization of the Inverse- Feasible Region of a Mixed-Integer Program,” 2015. Operations Research Letters volume 43, number 6, pp. 575-578.
17.  Khademi, A.†, D. Saure, A. J. Schaefer, M. S. Roberts and R. S. Braithwaite, “The Price of Nonabandonment: HIV in Resource-Limited Settings,” 2015. Manufacturing & Service Operations Management volume 17, number 4, pp. 554-570.
18. Sun, R.†, O. A. Shylo and A. J. Schaefer, “Totally Unimodular Multistage Stochastic Programs,” 2015. Operations Research Letters volume 43, number 1, pp. 29-33.
19. Kabiri, M., A. B. Jazwinski, M. S. Roberts, A. J. Schaefer, and J. Chhatwal, “The Changing Burden of Hepatitis C Infection in the United States: Model-Based Predictions,” 2014. Annals of Internal Medicine volume 161, number 3, pp. 170-180.
20. Khademi, A.†, R. S. Braithwaite, D. Saure, A. J. Schaefer, K. Nucifora and M. S. Roberts, “Should Expectations about the Rate of New Antiretroviral Drug Development Impact the Timing of HIV Treatment Initiation and Expectations about Treatment Benefits?” 2014. PLoS ONE volume 9, issue 6, e98354.
21. Shylo, O. V., O. A. Prokopyev, and A. J. Schaefer, “Stochastic Operating Room Scheduling for High Volume Specialties under Block Booking,” 2013. INFORMS Journal on Computing volume 25, number 4, pp. 682-692.
22. Sandikci, B.†, L. M. Maillart, A. J. Schaefer, and M .S. Roberts, “Alleviating the Patient’s Price of Privacy through a Partially Observed Waiting List,” 2013. Management Science volume 59, number 8, pp. 1836-1854.
23. Kaufman, D. L., and A. J. Schaefer, “Robust Modified Policy Iteration,” 2013. INFORMS Journal on Computing volume 25, number 3, pp. 396-410.
24. Kong, N.†, A. J. Schaefer, and S. Ahmed, “Totally Unimodular Stochastic Programs,” 2013. Mathematical Programming Series A volume 138, pp. 1-13.
25. Sandikci, B.†, N. Kong†, and A. J. Schaefer, “A Hierarchy of Bounds for Stochastic Mixed-Integer Programs,” 2013. Mathematical Programming Series A volume 138, pp. 253-272.
26. Trapp, A. C., O. A. Prokopyev, and A. J. Schaefer, “On a Level-Set Characterization of the Integer Programming Value Function and its Application to Stochastic Programming,” 2013. Operations Research volume 61, number 2, pp. 498-511.
27. Özaltĭn, O.†, O. A. Prokopyev, and A. J. Schaefer, “Two-stage Quadratic Integer Programs with Stochastic Right-hand Sides,” 2012. Mathematical Programming Series A volume 133, number 1, pp. 121-158. Test Instances.
28. Demirci, M. C.†, A. J. Schaefer, H. E. Romeijn, and M. S. Roberts, “An Exact Method for Balancing Efficiency and Equity in the Liver Allocation Hierarchy,” 2012. INFORMS Journal on Computing volume 24, number 2, pp. 260-275.
29. Özaltĭn, O.†, O. A. Prokopyev, A. J. Schaefer, and M. S. Roberts, “Optimizing the Societal Benefits of the Annual Influenza Vaccine: A Stochastic Programming Approach,” 2011. Operations Research volume 59, number 5, pp. 1131-1143.
30. Batun, S.†, B. T. Denton, T. R. Huschka, and A. J. Schaefer, “The Benefit of Pooling Operating Rooms under Uncertainty,” 2011. INFORMS Journal on Computing volume 23, number 2, pp. 220-237.
31. Shah, N. D., B. T. Denton, M. Kurt†, A. J. Schaefer, S. A. Smith, and V. M. Montori, “Comparative Effectiveness of Guidelines for the Management of Hyperlipidemia and Hypertension for Type 2 Diabetes Patients,” 2011. PLoS ONE volume 6, number 1 e16170.
32. Rajgopal, J., Z. Wang†, A. J. Schaefer, and O. Prokopyev, “Integrated Design and Operation of Remnant Inventory Supply Chains under Uncertainty,” 2011. European Journal of Operational Research volume 214, pp. 358-364.
33. Kurt, M.†, B. Denton, A. J. Schaefer, N. Shah, and S. Smith, “The Structure of Optimal Statin Initiation Policies for Patients with Type 2 Diabetes,” 2011. IIE Transactions on Healthcare Systems Engineering volume 1, number 1, pp. 49-65.
34. Özaltĭn, O.†, B. K. Hunsaker, and A. J. Schaefer, “Predicting the Solution Time of Branch-and-Bound Algorithms for Mixed-Integer Programs,” 2011. INFORMS Journal on Computing volume 23, number 3, pp. 392-403. Electronic Companion.
35. Kong, N.†, A. J. Schaefer, B. K. Hunsaker, and M. S. Roberts, “Maximizing the Efficiency of the U.S. Liver Allocation System through Region Design,” 2010. Management Science volume 56, number 12, pp. 2111-2122.
36. Trukhanov, S., L. Ntaimo, and A. J. Schaefer, “On Adaptive Multicut Aggregation for Two-Stage Stochastic Linear Programs with Recourse,” 2010. European Journal of Operational Research volume 206, number 2, pp.395-406.
37. Özaltĭn, O.†, O. A. Prokopyev, and A. J. Schaefer, “The Bilevel Knapsack Problem with Stochastic Right-hand Sides,” 2010. Operations Research Letters volume 38, number 4, pp. 328-333.
38. Erkin, Z. E., M. D. Bailey, L. M. Maillart, A. J. Schaefer, and M. S. Roberts, “Eliciting Patients’ Revealed Preferences: An Inverse MDP Approach,” 2010. Decision Analysis volume 7, number 4, pp. 358-365.
39. Alagoz, O.†, H. Hsu, A. J. Schaefer, and M. S. Roberts, “Markov Decision Processes: A Tool for Sequential Decision Making under Uncertainty,” 2010. Medical Decision Making volume 30, number 4, pp. 474-483.
40. Schaefer, A. J., “Inverse Integer Programming,” 2009. Optimization Letters volume 3, number 4, pp. 483-489
41. Taskin, Z. C., J. C. Smith, S. Ahmed, and A. J. Schaefer, “Cutting Plane Algorithms for Solving a Robust Edge Partition Problem,” 2009. Discrete Optimization volume 6, number 4, pp. 420-435.
42. Rajgopal, J., Z. Wang†, A. J. Schaefer, and O. Prokopyev, “Effective Management Policies for Remnant Inventory Supply Chains,” 2009. IIE Transactions volume 41, number 5, pp. 437-447.
43. Braithwaite, R. S., M. S. Roberts, C. C. Chang, M. Goetz, C. Gilbert, M. Rodriguez, S. Shechter†, A. J. Schaefer, K. Nucifora, R. Koppenhaver†, and A. Justice, “The Influence of Alternative Thresholds for Initiating HIV Treatment on Life Expectancy and Quality-adjusted Life Expectancy: A Decision Model,” 2008. Annals of Internal Medicine volume 148, number 3, pp. 178-185.
44. Shechter, S. M.†, M. D. Bailey, A. J. Schaefer, and M. S. Roberts, “The Optimal Time to Initiate HIV Therapy under Ordered Health States,” 2008. Operations Research volume 56, number 1, pp. 20-33. Electronic Companion.
45. Sandikci, B.†, L. M. Maillart, A. J. Schaefer, O. Alagoz†, and M. S. Roberts, “Estimating the Patient’s Price of Privacy in Liver Transplantation,” 2008. Operations Research volume 56, number 6, pp.1393-1410.
46. tahl, J. E., J. E. Kreke†, F. Abdulmalek, A. J. Schaefer, and J. Vacanti “The Effect of Cold-Ischemia Time on Primary Nonfunction, Patient and Graft Survival in Liver Transplantation: A Systematic Review,” 2008. PLoS ONE volume 3 number 6: e2468.
47. Kreke, J. E.†, M. D. Bailey, A. J. Schaefer, M. S. Roberts, and D. C. Angus, “Modeling Hospital Discharge Policies for Patients with Pneumonia-Related Sepsis,” 2008. IIE Transactions volume 40, number 9, pp. 853-860.
48. Shechter, S. M.†, M. D. Bailey, and A. J. Schaefer, “A Modeling Framework for Replacing Medical Therapies,” 2008. IIE Transactions volume 40, number 9, pp. 861- 869.
49. Shechter, S. M.†, M. D. Bailey, and A. J. Schaefer, “Replacing Nonidentical Components to Extend System Life,” 2008. Naval Research Logistics volume 55, number 7, pp. 700-703.
50. Alagoz, O.†, L. M. Maillart, A. J. Schaefer, and M. S. Roberts, “Determining the Acceptance of Cadaveric Livers Using an Implicit Model of the Waiting List,” 2007. Operations Research volume 55, number 1, pp. 24-36. Electronic Companion.Braithwaite, R. S., S. M. Shechter†, C.-C. Chang, A. J. Schaefer, and M. S. Roberts, “Estimating the Rate of Accumulating Drug Resistance Mutations in the HIV Genome,” 2007. Value in Health volume 10, number 3, pp 204-213.
51. Braithwaite, R. S., S. M. Shechter†, C.-C. Chang, A. J. Schaefer, and M. S. Roberts, “Estimating the Rate of Accumulating Drug Resistance Mutations in the HIV Genome,” 2007. Value in Health volume 10, number 3, pp 204-213.
52. Braithwaite R. S., J. Conigliaro, M. S. Roberts, S. M. Shechter†, A. J. Schaefer, K. McGinnis, M. Rodriguez, L. Rabeneck, K. Bryant, and A. C. Justice, “Estimating the Impact of Alcohol Consumption on Survival for HIV+ Individuals,” 2007. AIDS Care volume 19, number 4, pp. 459-466.
53. Alagoz, O.†, L. M. Maillart, A. J. Schaefer, and M. S. Roberts, “Choosing among Living-Donor and Cadaveric Livers,” 2007. Management Science volume 53, number 11, pp. 1702-1715.
54. Saka, G.†, J. E. Kreke†, A. J. Schaefer, C.-C. Chang, M. S. Roberts, and D. C. Angus, “Use of Dynamic Microsimulation to Predict Disease Progression in Patients with Pneumonia-related Sepsis,” 2007. Critical Care 11:R65.
55. Kong, N.† and A. J. Schaefer, “A Factor 1⁄2 Approximation Algorithm for Two-Stage Stochastic Matching Problems,” 2006. European Journal of Operational Research volume 172, pp. 740-746.
56. Bailey, M. D., S. M. Shechter†, and A. J. Schaefer, “SPAR: Stochastic Programming with Adversarial Recourse,” 2006. Operations Research Letters volume 34, number 3 pp. 307-315.
57. Schaefer, A. J. and G. L. Nemhauser, “Improving Airline Operational Performance through Schedule Perturbation,” 2006. Annals of Operations Research volume 144, pp. 3-16.
58. Shechter, S. M.†, A. J. Schaefer, R. S. Braithwaite and M. S. Roberts, “Increasing the Efficiency of Monte Carlo Cohort Simulations with Variance Reduction Techniques,” 2006. Medical Decision Making volume 26, number 5, pp. 550-553.
59. Kong, N.†, A. J. Schaefer, and B. K. Hunsaker, “Two-Stage Integer Programs with Stochastic Right-Hand Sides – A Superadditive Dual Approach,” 2006. Mathematical Programming Series B volume 108, pp. 275-296.
60. Braithwaite R. S., S. M. Shechter†, M. S. Roberts, A. J. Schaefer, D. R. Bangsberg, P. R. Harrigan, and A. C. Justice, “Explaining Variability in the Relationship between Antiretroviral Adherence and HIV Accumulation,” 2006. Journal of Antimicrobial Chemotherapy volume 58, pp. 1036-1043.
61. Shechter, S. M.†, C. L. Bryce, O. Alagoz†, J. E. Kreke†, J. E. Stahl, A. J. Schaefer, D. C. Angus, and M. S. Roberts, “A Clinically Based Discrete Event Simulation of End- Stage Liver Disease and the Organ Allocation Process,” 2005. Medical Decision Making volume 25, number 2, pp. 199-209.
62. Stahl J.E., N. Kong†, S. M. Shechter†, A. J. Schaefer, and M. S. Roberts, “A Methodological Framework for Optimally Reorganizing Liver Transplant Regions,” 2005. Medical Decision Making volume 25, number 1, pp.35-46.
63. Schaefer, A. J., E. L. Johnson, A. J. Kleywegt, and G. L. Nemhauser, “Airline Crew Scheduling under Uncertainty,” 2005. Transportation Science volume 39, number 3, pp. 340-348.
64. Alagoz, O.†, C. L. Bryce, S. M. Shechter†, A. J. Schaefer, C.-C. H. Chang, D. C. Angus, and M. S. Roberts, “Incorporating Biological Natural History in Simulation Models: Empiric Estimates of the Progression of End-Stage Liver Disease,” 2005. Medical Decision Making volume 25, pp. 620-632.
65. Smith, J. C., A. J. Schaefer, and J. Yen, “A Stochastic Integer Programming Approach to Solving a Synchronous Optical Network Design Problem,” 2004. Networks volume 44, number 1, pp. 12-26.
66. Schaefer, L. A. and A. J. Schaefer, “Locating Hybrid Fuel Cell-Turbine Power Generation Units Under Uncertainty,” 2004. Annals of Operations Research volume 132, pp. 301-332.
67. Alagoz, O.†, L. M. Maillart, A. J. Schaefer, and M. S. Roberts, “The Optimal Timing of Living-Donor Liver Transplantation,” 2004. Management Science volume 50, number 10, pp. 1420-1430.
68. Kreke, J. E. †, A. J. Schaefer, and M. S. Roberts, “Simulation and Critical Care Modeling,” 2004. Current Opinion in Critical Care volume 10, number 5, pp. 395-398.
69. Rosenberger, J. M., A. J. Schaefer, D. Goldsman, E. L. Johnson, A. J. Kleywegt, and G. L. Nemhauser, “A Stochastic Model of Airline Operations,” 2002. Transportation Science volume 36, number 4, pp. 357-377.

Chapters in Edited Books